Special Issues

Microorganisms publishes Special Issues to create collections of papers on specific topics, with the aim of building a community of authors and readers to discuss the latest research and develop new ideas and research directions. Special Issues are led by Guest Editors, who are experts on the topic. The journal’s Editor-in-Chief and/or designated EBM will oversee Guest Editor appointments and Special Issue proposals, checking their content for relevance and ensuring the suitability of the material for the journal. The papers published in a Special Issue will be collected and displayed on a dedicated page of the journal’s website. For any inquiries related to a Special Issue, please contact the Editorial Office.

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Parasitic Diseases in Livestock submission deadline 15 May 2024 | 7 articles | Viewed by 12939 | Submission Open
(This special issue belongs to the Section Parasitology)
Epidemiology and Control Strategies for Brucellosis
edited by and Giuliano Garofolo
submission deadline 15 May 2024 | 6 articles | Viewed by 11488 | Submission Open
Keywords: brucellosis; surveillance; control; eradication; vaccination
(This special issue belongs to the Section Veterinary Microbiology)
Gut Microbiota and Nutrients 2.0
edited by
submission deadline 15 May 2024 | 5 articles | Viewed by 9383 | Submission Open
(This special issue belongs to the Section Gut Microbiota)
Biotechnological Applications of Bacteriophages and Enteric Viruses submission deadline 15 May 2024 | 5 articles | Viewed by 9166 | Submission Open
(This special issue belongs to the Section Microbial Biotechnology)
Human Skin Microbiota 2.0 submission deadline 15 May 2024 | 5 articles | Viewed by 8038 | Submission Open
Keywords: skin microbiota; skin microbiome; skin metagenome; skin microorganism; Staphylococcus; Cutibacterium; Corynebacterium; Finegoldia; Malassezia; phage; population genetics; microbial genomics; next generation sequencing; strain diversity; antimicrobials bacterial interference; immune system interaction; colonization resistance; prebiotics; probiotics
(This special issue belongs to the Section Medical Microbiology)
Water Microorganisms Associated with Human Health
edited by
submission deadline 15 May 2024 | 6 articles | Viewed by 7867 | Submission Open
Keywords: drinking water; recreational water; microorganisms; biomarkers; emerging contaminants; risk assessment; waterborne diseases; One Health
(This special issue belongs to the Section Public Health Microbiology)
Insights into the Role of Microbiota in Chronic Diseases submission deadline 15 May 2024 | 3 articles | Viewed by 7408 | Submission Open
Keywords: gut microbiota; dysbiosis; inflammation; probiotics; antibiotics; inflammatory bowel disease; diabetes; dyslipidemia; anxiety; depression; arthropathy
(This special issue belongs to the Section Medical Microbiology)
Antimicrobial Effects of Bioactive Compounds: Phytoproducts-Based Fight against Pathogens submission deadline 15 May 2024 | 3 articles | Viewed by 5149 | Submission Open
Keywords: pathogens agents; natural antimicrobials; bioactive phytoproducts
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
Application of Microbes in Environmental Remediation
edited by Qiang Tu, and Zhi Chen
submission deadline 15 May 2024 | 3 articles | Viewed by 3376 | Submission Open
Keywords: microbial remediation; microbial improvement; heavy metal pollution; organic pollution; soil
(This special issue belongs to the Section Environmental Microbiology)
Clinical Viral Infections and Autoimmunity submission deadline 15 May 2024 | 2 articles | Viewed by 3243 | Submission Open
Keywords: viral infection; EBV; CMV; SARS-CoV-2; autoimmunity; anti-nuclear antibodies; vaccines; autoreactive immune cells; immunopathogenesis
(This special issue belongs to the Section Virology)
Microbial Ecology of Soil Microorganisms, Networks with Plants and Ecosystem Services submission deadline 15 May 2024 | 3 articles | Viewed by 2672 | Submission Open
Keywords: soil microorganisms; ecosystems; plant– microbe interactions; microbial diversity; ecosystem services; emerging technologies
(This special issue belongs to the Section Plant Microbe Interactions)
The Potential of Antimicrobial Activity and Antibiofilm Activity of Bacteriocins
edited by
submission deadline 15 May 2024 | 2 articles | Viewed by 2262 | Submission Open
Keywords: bacteriocins; antimicrobial; antibiofilm
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
Advances in Medical Microbiology
edited by
submission deadline 15 May 2024 | 3 articles | Viewed by 2151 | Submission Open
(This special issue belongs to the Section Medical Microbiology)
Epidemiology of Leptospira sp. Infection: Current Status, Insights and Future Prospects 2.0 submission deadline 15 May 2024 | 1 articles | Viewed by 1458 | Submission Open
Keywords: Leptospira sp.; leptospirosis; epidemiology; control; environment; diagnosis
(This special issue belongs to the Section Parasitology)
Effect of Microbial Communities for Environmental Protection and Development of Agriculture
edited by Alejandro Rodriguez-Sanchez
submission deadline 15 May 2024 | 1 articles | Viewed by 1027 | Submission Open
Keywords: environmental microbial communities; environmental protection; agriculture potentiation; bioremediation; ecosystem functioning; biotic and abiotic stresses
(This special issue belongs to the Section Environmental Microbiology)
Research on Biology of Dinoflagellates
edited by , Tania Islas-Flores and Estefanía Morales-Ruiz
submission deadline 15 May 2024 | 1 articles | Viewed by 957 | Submission Open
Keywords: dinoflagellate; molecular biology; genomics; transcriptomics; proteomics; metabolomic
(This special issue belongs to the Section Environmental Microbiology)
Evaluation of Risks of Microbiological Origin Associated with Food Consumption 3.0 submission deadline 15 May 2024 | 1 articles | Viewed by 444 | Submission Open
Keywords: food safety; food consumption; food preparation; food handling; microbiological risk assessment; predictive microbiology
(This special issue belongs to the Section Food Microbiology)
Microbial Methane Production and Oxidation
edited by Xueqin Zhang and
submission deadline 15 May 2024 | Viewed by 246 | Submission Open
Keywords: methane; methanogen; methanotroph; anaerobic oxidation of methane; microbiology; ecology; physiology
(This special issue belongs to the Section Environmental Microbiology)
Overview of Foodborne Pathogens and Antimicrobial Resistance
edited by Rebecca Lynn Lindsey
submission deadline 15 May 2024 | Viewed by 207 | Submission Open
Keywords: foodborne pathogens; virulence; antimicrobial resistance; Campylobacter spp.; Cronobacter spp.; non-typhoidal Salmonella; shiga-toxin-producing Escherichia coli (STEC); other Escherichia; Listeria spp.; public health; food safety; One Health; surveillance
(This special issue belongs to the Section Food Microbiology)
Research on Microbial Periprosthetic Infections
edited by Hesham Abdelbary, George Grammatopoulos and Simon Garceau
submission deadline 15 May 2024 | Viewed by 188 | Submission Open
Keywords: biofilm; implant surface; immune system; delivery mechanisms; antibiotic resistance
(This special issue belongs to the Section Biofilm)
Microbiome and Genitourinary Diseases
edited by Tariq A. Bhat
submission deadline 15 May 2024 | Viewed by 158 | Submission Open
Keywords: microbiome; genitourinary cancers; bladder; prostate cancer; and kidney cancer; antitumor immunity; immunotherapy; urinary microbial dysbiosis; microbiome and cancer development
(This special issue belongs to the Section Microbiomes)
Advances in Cutaneous Mycosis
edited by
submission deadline 15 May 2024 | Viewed by 158 | Submission Open
(This special issue belongs to the Section Medical Microbiology)
Phage-Bacteria Interplay: Phage Biology and Phage Therapy
edited by Hesham Abdelbary and Mariam Taha
submission deadline 15 May 2024 | Viewed by 154 | Submission Open
Keywords: microbiome; phage therapy; phage resistance; phage biology; phage engineering
(This special issue belongs to the Section Molecular Microbiology and Immunology)
Advances in Cryptococcus and Cryptococcosis, 2nd Edition
edited by Nuria Trevijano-Contador
submission deadline 15 May 2024 | Viewed by 139 | Submission Open
Keywords: Cryptococcus neoformans; Cryptococcus gattii; in vitro methods; virulence factors; host capsule; titan cells; anti-cryptococcal agents; host immune response to cryptococcosis; therapies
(This special issue belongs to the Section Medical Microbiology)
Multidrug-Resistant Bacteria and Strategies for Antibiotic Resistance Mitigation, 2nd Edition submission deadline 15 May 2024 | Viewed by 124 | Submission Open
Keywords: antimicrobial resistance; food animals; agriculture; poultry; alternatives; diagnostic tools; mechanisms of transmission; outreach; food animal/poultry– human interface; environment; resistome; microbiome; metabolome; stewardship; mitigation; wildlife
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
Advances in Mycoplasma Research
edited by Li Xiao
submission deadline 15 May 2024 | Viewed by 117 | Submission Open
Keywords: mycoplasmas; physiological mechanisms; pathogenicity; host interactions; antimicrobial strategies; biotechnological applications
(This special issue belongs to the Section Medical Microbiology)
Role of Oral Microbiota in Oral and General Health in Adults and Children submission deadline 20 May 2024 | 1 articles | Viewed by 1069 | Submission Open
Keywords: oral microbiota; oral bacteria; oral viruses; oral fungi; oral protozoa; oral health; oral disease; general health; children
(This special issue belongs to the Section Medical Microbiology)
Specialized Metabolites from Microorganisms
edited by
submission deadline 30 May 2024 | 3 articles | Viewed by 12532 | Submission Open
Keywords: specialized; specialised; secondary; metabolite; bacteria; yeast; fungus
(This special issue belongs to the Section Microbial Biotechnology)
Advances in Soil Microbiome 2.0
edited by Ryan McClure and Matthew Kaufman
submission deadline 30 May 2024 | 8 articles | Viewed by 9965 | Submission Open
Keywords: soil; microbiology; rhizosphere; plant microbe; metaphenome
(This special issue belongs to the Section Microbiomes)
Oral Biofilms and Human Health
edited by , , and Jeffrey S. McLean
submission deadline 30 May 2024 | 4 articles | Viewed by 7785 | Submission Open
Keywords: dental plaque; oral biofilm; precision health; therapeutics; inflammation; immunity; microbiome; imaging; diagnostics; single-cell sequencing
(This special issue belongs to the Section Biofilm)
Recent Advances in Coxsackievirus Infections: Epidemiology, Pathogenesis and Methods for Control and Prevention
edited by and
submission deadline 30 May 2024 | 1 articles | Viewed by 2002 | Submission Open
(This special issue belongs to the Section Medical Microbiology)
Research on Natural Products against Pathogens submission deadline 30 May 2024 | 1 articles | Viewed by 1382 | Submission Open
Keywords: natural products; secondary metabolites; biological activity; antimicrobial; antibacterial; antiviral; antiparasitic; pathogens; microorganisms
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
Antimicrobial Resistance and the Use of Antibiotics in Animals
edited by
submission deadline 30 May 2024 | 1 articles | Viewed by 869 | Submission Open
Keywords: antimicrobial resistance; animal infectious diseases; antibiotics in animals; agriculture; veterinary microbiology; zoonotic diseases
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
Ebola, Herpetic Eye Disease, and Ocular Complications of Emerging Infectious Diseases
edited by Steve Yeh
submission deadline 30 May 2024 | Viewed by 157 | Submission Open
Keywords: Eebola; herpetic eye disease; emerging infectious diseases; prevention and treatment
(This special issue belongs to the Section Public Health Microbiology)
Recent Advances on Microbial Interactions with Materials and Their Applications
edited by , and Fang Guan
submission deadline 31 May 2024 | 5 articles | Viewed by 8153 | Submission Open
Keywords: microbiologically influenced corrosion; biofouling; biomineralization and bioleaching; elements cycle; microbial degradation.
(This special issue belongs to the Section Environmental Microbiology)
Immune Modulation to SARS-CoV-2 Vaccination and Infection
edited by
submission deadline 31 May 2024 | 4 articles | Viewed by 7327 | Submission Open
Keywords: COVID-19; SARS-CoV-2; infection; immune response; antibody response; memory cells; vaccine; vaccine delivery; route of immunization; immune persistence
(This special issue belongs to the Section Molecular Microbiology and Immunology)
Endophytes for Managing Biotic and Abiotic Stress in Plants 2.0 submission deadline 31 May 2024 | 3 articles | Viewed by 5885 | Submission Open
(This special issue belongs to the Section Plant Microbe Interactions)
The Urban Microbiome
edited by and
submission deadline 31 May 2024 | 2 articles | Viewed by 5558 | Submission Open
Keywords: urban microbiome; shotgun metagenomic sequencing; targeted amplicon sequencing (16S/18S/ITS); metatranscriptome; metaproteome; metametabolome; metagenome-assembled genomes (MAGs); microbiome of built environment (MoBE); MetaSUB international consortium; biosynthetic gene clusters (BGCs); antimicrobial resistance (AMR); mobile genetic elements (MGEs) such as phages and plasmids; pathogenic microbes including SARS-CoV-2
(This special issue belongs to the Section Environmental Microbiology)
Biodegradation of Hazardous Organic Contaminants
edited by
submission deadline 31 May 2024 | 4 articles | Viewed by 5347 | Submission Open
Keywords: biodegradation; persistent organic pollutants; microbial enzymes for biodegradation; metabolic pathways of pollutants; pollutant catabolism genes
(This special issue belongs to the Section Environmental Microbiology)
Prevention and Treatment of Helicobacter pylori Infection Related Gastrointestinal Disease
edited by Ping I. Hsu
submission deadline 31 May 2024 | 3 articles | Viewed by 5247 | Submission Open
Keywords: Helicobacter pylori (H. pylori); prevention; treatment; gastrointestinal disease
(This special issue belongs to the Section Medical Microbiology)
The Role of Microbes in Biorefinery Products and Biofuels
edited by
submission deadline 31 May 2024 | 2 articles | Viewed by 4928 | Submission Open
Keywords: biofuels; biochemicals; bioactives; circular bioeconomy; fermentation; anaerobic digestion; bioprocessing; biotechnology; waste valorization; sustainability
(This special issue belongs to the Section Microbial Biotechnology)
Gram Positive Toxins Producing Organisms 2.0 submission deadline 31 May 2024 | 2 articles | Viewed by 4497 | Submission Open
(This special issue belongs to the Section Molecular Microbiology and Immunology)
Clinical Implications of Microbial Biofilm 2.0 submission deadline 31 May 2024 | 1 articles | Viewed by 4429 | Submission Open
Keywords: biofilms; clinical studies; biofilm microbial interaction; biofilm-related infections device-related biofilm diseases; antibiotic tolerance; host immune response evasion; biofilm clinical indicators
(This special issue belongs to the Section Biofilm)
Detection and Epidemiology of Vector-, Food- and Water-Borne Pathogens with a Focus on One Health Approaches
edited by Katrin Gaardbo Kuhn
submission deadline 31 May 2024 | 3 articles | Viewed by 4274 | Submission Open
Keywords: vector-borne pathogens; food-borne pathogens; water-borne pathogens; detection; monitoring; transmission; epidemiology; One Health; emerging
(This special issue belongs to the Section Public Health Microbiology)
Bacillus anthracis: Infection Mechanisms, Vaccination and Immune Response submission deadline 31 May 2024 | 2 articles | Viewed by 3574 | Submission Open
Keywords: Bacillus anthracis; anthrax; infection; pathogenesis; immunology; vaccines; immune response
(This special issue belongs to the Section Molecular Microbiology and Immunology)
Advanced Research on Biological Control of Plant Disease or Microbial Interactions 2.0
edited by and
submission deadline 31 May 2024 | 4 articles | Viewed by 3062 | Submission Open
(This special issue belongs to the Section Plant Microbe Interactions)
Omics Research in Microbial Ecology
edited by and Natalia Gogoleva
submission deadline 31 May 2024 | 1 articles | Viewed by 2824 | Submission Open
Keywords: microbial ecology; omics technology; omics data; microbiome; microbial communities; microbial symbioses; genomics; transcriptomics; metagenomics; proteomics; metabolomics; host-associated microbial community; water microorganisms; soil microorganisms; microbes associated with plants; microbes associated with animals; bacteria; archaea; fungi; algae; protists; viruses
(This special issue belongs to the Section Systems Microbiology)
New Advances in Functional Ingredients’ Development to Improve Physiological and Functional Properties of Probiotics
edited by , and
submission deadline 31 May 2024 | 2 articles | Viewed by 2792 | Submission Open
Keywords: bioactive compounds; encapsulation; probiotics
(This special issue belongs to the Section Microbial Biotechnology)
Yeasts Biochemistry and Biotechnology, 2nd Edition submission deadline 31 May 2024 | 2 articles | Viewed by 2592 | Submission Open
Keywords: yeast; eukaryote model; biotechnology; recombinant protein; bioproduction; protein engineering
(This special issue belongs to the Section Microbial Biotechnology)
Microorganisms in Functional Foods
edited by
submission deadline 31 May 2024 | 1 articles | Viewed by 2285 | Submission Open
Keywords: functional food; probiotics; prebiotics; fermentation; food microbiology; health promotion; gut diversity
(This special issue belongs to the Section Food Microbiology)
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